Bioconductor Ensembl mart

Showing : ensembl mart • reset

votes

1.1k

views

ensembl mart ensembl93 biomart news News

6.7 years ago amonida ▴ 20

vote

replies

1.9k

views

biomart rstudio ensembl mart

updated 7.1 years ago by Mike Smith ★ 6.6k • written 7.1 years ago by mullpaul • 0

votes

replies

4.4k

views

biomart error ensembl bioconductor ensembl mart

7.9 years ago • updated 7.8 years ago daniel.carbajo • 0

votes

replies

3.4k

views

bioconductor biomart entrez gene identifiers ensembl ensembl mart

updated 8.0 years ago by Thomas Maurel ▴ 800 • written 8.0 years ago by daniel.carbajo • 0

votes

replies

2.5k

views

ensembl ensembl mart biomart e!88 News

8.0 years ago Thomas Maurel ▴ 800

votes

replies

1.3k

views

ensembl ensemble mart ensembl mart biomart News

8.3 years ago amonida ▴ 20

vote

1.4k

views

ensembl biomart ensembl release ensembl mart News

8.5 years ago Thomas Maurel ▴ 800

7 results • Page 1 of 1

Recent ...

Replies

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Perhaps edgeR's upperquartile normalization handles this better, the MA looks a lot more centered at 0 ![enter image description here][1]…

Answer: DESeq2 - am I extracting results incorrectly? by James W. MacDonald 68k

If I assume that Followup gets converted to T3 and Treatment to LowSug somewhere along the line (and therefore GroupTreatment.Followup is G…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

I noticed the dual populations as well, when using csaw this is controlled for. Regarding the DE profile, given this disease condition we e…

Answer: Origin of the labels for the SingleCellMultiModal dataset by ATpoint ★ 4.8k

If you check the underlying code a bit you find that there is a file with data sources: ```r modes_file <- system.file("extdata", "metadat…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by ATpoint ★ 4.8k

That plot looks extremely worrying. You have very unbalanced DE profiles and clearly two populations of peaks on the right. I would make su…

Votes

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder

Comment: DESeq - help with pair wise comparisons

Answer: Is random access by row index possible for an indexed VCF file?

Answer: SingleR with multiple single cell references

Awards • All